Glyma05g33940 - SoyBase

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Report for Sequence Feature Glyma05g33940

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38433999
stop:	38438110
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g33940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18180	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1295) \| chr1:6255903-6257737 FORWARD LENGTH=305	SoyBase	E_val: 6.00E-154	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0016627	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors	SoyBase	N/A	ISS
KOG4650	KOG	Predicted steroid reductase	JGI		ISS
PTHR10556	Panther	3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE-RELATED	JGI		ISS
PTHR10556:SF24	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF06966	PFAM	Protein of unknown function (DUF1295)	JGI		ISS
UniRef100_B9DFE9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT1G73650 protein n=1 Tax=Arabidopsis thaliana RepID=B9DFE9_ARATH	SoyBase	E_val: 1.00E-149	ISS
UniRef100_I1K5D4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K5D4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g33940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g33940

Paralog	Evidence	Comments
Glyma08g05750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g33940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g245000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g33940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g33940

Limit To All Plant Sequences

>Glyma05g33940.2   sequence type=transcript   gene model=Glyma05g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCTTGTATTTTGTTGCGCTGAACAAGACAAGAAAACTACAAAGCTATGGGCACCATCATCGACTCCCATTTCTTGGCCTTCACTGCCCTTGTCACTATTGCCTATCAGTTTTTGTTTTTCGTCGTCACTGCGCTCCTCAAATTCGACAAAGTCACTGATTTTGCTGGAAGTACGAATTTCATTATAATTGCTGCATTGACCCTGGTCATCAAAGGCTCCTGGTATTTTCGACAGATAATCCTCACTTTGTTTGTTGGGATATGGGGAATTCGCCTCGGCCTTTTCCTCCTATTCAGAATTTTGCAGTGGGGAGAGGACCGACGCTTTGATGAAATGCGCAGTAATTTGGGTAGACTGGCCATATTTTGGATATTTCAGGCTGTCTGGGTGTGGGCTGTGAGTTTACCTGTTACAGTGGTTAATGCAAGCGACAGAAATCCCTTCCTACAGGTTGTTGATATAGTAGGGTGGATTTTGTGGGCTGTGGGTTTTATTGTGGAAGGTACAGCAGATCAACAAAAGCTGCATTTCAAAAGATCTTCAGAAAATAGAGGGAAGTGGTGTAATGTTGGACTTTGGAAATATTCTCGTCATCCTAACTATTTTGGTGAAATATTGCTTTGGTGGGGAATTTTTGTGGCATCTACACCTGTACTGAAGGGTGCTGAATGGCTGGTGATCATTGGACCAATCTTTCTCACATTATTGCTTCTTTTTGTCAGTGGCATTCCACTTCTTGAGGATTCAGCGGATAAAAAGTTTGGCAATGTAGATGGATATAGGATATACAAAAAGAGAACCAGGTTAATTTACCTCCTCAATGTCATATATCTTTTCGGTCTCTGGTTAAGCAGAAATGTCTCTTCACCTAGTGCGATGAGTCGATTATTATTGTTTTGTCATTAAGGAGAAATGACTAAGCCCAATCATTTTCAGCCCTTTAATCCCGTTGCCACGATCAATCTATGGGAACTTATCCGCATGGTTCAAAACAACTTTTCTCTTCGAGTTTCCATTCTACAGTCGTAATCTACCACAAGAAGAGAACTGGTGAAATGGTATTAAATTTTTTAGTATCTGCTCAAGGTGCAGTGCAAACAGTGGGAAAATCAGTGATGCTCTGAAAATTGGCTAGCACTTGGTTCTTTGAATTTGTTTGGTTCCTGTCTTACGTCAGACTGAAGTTGCAGCTGGTATCATCATCCGCCATGGTTAGGGATGTGGCTTTGTAATGCTATTGCAGCTTTCCTTCTAGATTTAATCTTTCTAATTTGCTTGTTCTCTCTTAGATATGTATAAATTTACGTACTATATATGTTGTGTGCAAGTACTATGGCTTGTGCAGGTAACTAATGGATCAATCATGTTTTTCATCTTATTTCTTCTATTGCAACTCTCATTGTGGACCTGCAGCATGCCAACATCGGCAGATATTGAACACAAATGTTTTGTTGATGTATCCTAATATTGTATTTAGTTAAATTCATTTCTGAATACAATGTAGTTATAAACT

>Glyma05g33940.3   sequence type=transcript   gene model=Glyma05g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGAAGTTAAGAATTAAGTTTTTTTTCATCACGGGACTAAAATTATCATTTAAGAAAATTAAATTCAGTACAGTAATTGACGTAAATAAAAAATAAAAAAATAAAAATGTTACAAAGTACTCGACTATTAAACATGACAATTGGTCATCGTCTTCTTCATTCTTGTATTTTGTTGCGCTGAACAAGACAAGAAAACTACAAAGCTATGGGCACCATCATCGACTCCCATTTCTTGGCCTTCACTGCCCTTGTCACTATTGCCTATCAGTTTTTGTTTTTCGTCGTCACTGCGCTCCTCAAATTCGACAAAGTCACTGATTTTGCTGGAAGTACGAATTTCATTATAATTGCTGCATTGACCCTGGTCATCAAAGGCTCCTGGTATTTTCGACAGATAATCCTCACTTTGTTTGTTGGGATATGGGGAATTCGCCTCGGCCTTTTCCTCCTATTCAGAATTTTGCAGTGGGGAGAGGACCGACGCTTTGATGAAATGCGCAGTAATTTGGGTAGACTGGCCATATTTTGGATATTTCAGGCTGTCTGGGTGTGGGCTGTGAGTTTACCTGTTACAGTGGTTAATGCAAGCGACAGAAATCCCTTCCTACAGGTTGTTGATATAGTAGGGTGGATTTTGTGGGCTGTGGGTTTTATTGTGGAAGGTACAGCAGATCAACAAAAGCTGCATTTCAAAAGATCTTCAGAAAATAGAGGGAAGTGGTGTAATGTTGGACTTTGGAAATATTCTCGTCATCCTAACTATTTTGGTGAAATATTGCTTTGGTGGGGAATTTTTGTGGCATCTACACCTGTACTGAAGGGTGCTGAATGGCTGGTGATCATTGGACCAATCTTTCTCACATTATTGCTTCTTTTTGTCAGTGGCATTCCACTTCTTGAGGATTCAGCGGATAAAAAGTTTGGCAATGTAGATGGATATAGGATATACAAAAAGAGAACCAGCCCTTTAATCCCGTTGCCACGATCAATCTATGGGAACTTATCCGCATGGTTCAAAACAACTTTTCTCTTCGAGTTTCCATTCTACAGTCGTAATCTACCACAAGAAGAGAACTGGTGAAATGGTATTAAATTTTTTAGTATCTGCTCAAGGTGCAGTGCAAACAGTGGGAAAATCAGTGATGCTCTGAAAATTGGCTAGCACTTGGTTCTTTGAATTTGTTTGGTTCCTGTCTTACGTCAGACTGAAGTTGCAGCTGGTATCATCATCCGCCATGGTTAGGGATGTGGCTTTGTAATGCTATTGCAGCTTTCCTTCTAGATTTAATCTTTCTAATTTGCTTGTTCTCTCTTAGATATGTATAAATTTACGTACTATATATGTTGTGTGCAAGTACTATGGCTTGTGCAGGTAACTAATGGATCAATCATGTTTTTCATCTTATTTCTTCTATTGCAACTCTCATTGTGGACCTGCAGCATGCCAACATCGGCAGATATTGAACACAAATGTTTTGTTGATGTATCCTAATATTGTATTTAGTTAAATTCATTTCTGAATACAATGTAGTTATAAACTAACGGAATGCTTCTGTCTGGTGAATGTGCTGAGAAAGTCATCTGTCATTGGTCGTCCAAGGGTGTGTTTGG

Coding sequences of Glyma05g33940

Limit To All Plant Sequences

>Glyma05g33940.1   sequence type=CDS   gene model=Glyma05g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACCATCATCGACTCCCATTTCTTGGCCTTCACTGCCCTTGTCACTATTGCCTATCAGTTTTTGTTTTTCGTCGTCACTGCGCTCCTCAAATTCGACAAAGTCACTGATTTTGCTGGAAGTACGAATTTCATTATAATTGCTGCATTGACCCTGGTCATCAAAGGCTCCTGGTATTTTCGACAGATAATCCTCACTTTGTTTGTTGGGATATGGGGAATTCGCCTCGGCCTTTTCCTCCTATTCAGAATTTTGCAGTGGGGAGAGGACCGACGCTTTGATGAAATGCGCAGTAATTTGGGTAGACTGGCCATATTTTGGATATTTCAGGCTGTCTGGGTGTGGGCTGTGAGTTTACCTGTTACAGTGGTTAATGCAAGCGACAGAAATCCCTTCCTACAGGTTGTTGATATAGTAGGGTGGATTTTGTGGGCTGTGGGTTTTATTGTGGAAGGTACAGCAGATCAACAAAAGCTGCATTTCAAAAGATCTTCAGAAAATAGAGGGAAGTGGTGTAATGTTGGACTTTGGAAATATTCTCGTCATCCTAACTATTTTGGTGAAATATTGCTTTGGTGGGGAATTTTTGTGGCATCTACACCTGTACTGAAGGGTGCTGAATGGCTGGTGATCATTGGACCAATCTTTCTCACATTATTGCTTCTTTTTGTCAGTGGCATTCCACTTCTTGAGGATTCAGCGGATAAAAAGTTTGGCAATGTAGATGGATATAGGATATACAAAAAGAGAACCAGCCCTTTAATCCCGTTGCCACGATCAATCTATGGGAACTTATCCGCATGGTTCAAAACAACTTTTCTCTTCGAGTTTCCATTCTACAGTCGTAATCTACCACAAGAAGAGAACTGGTGCAGTGCAAACAGTGGGAAAATCAGTGATGCTCTGAAAATTGGCTAG

>Glyma05g33940.2   sequence type=CDS   gene model=Glyma05g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACCATCATCGACTCCCATTTCTTGGCCTTCACTGCCCTTGTCACTATTGCCTATCAGTTTTTGTTTTTCGTCGTCACTGCGCTCCTCAAATTCGACAAAGTCACTGATTTTGCTGGAAGTACGAATTTCATTATAATTGCTGCATTGACCCTGGTCATCAAAGGCTCCTGGTATTTTCGACAGATAATCCTCACTTTGTTTGTTGGGATATGGGGAATTCGCCTCGGCCTTTTCCTCCTATTCAGAATTTTGCAGTGGGGAGAGGACCGACGCTTTGATGAAATGCGCAGTAATTTGGGTAGACTGGCCATATTTTGGATATTTCAGGCTGTCTGGGTGTGGGCTGTGAGTTTACCTGTTACAGTGGTTAATGCAAGCGACAGAAATCCCTTCCTACAGGTTGTTGATATAGTAGGGTGGATTTTGTGGGCTGTGGGTTTTATTGTGGAAGGTACAGCAGATCAACAAAAGCTGCATTTCAAAAGATCTTCAGAAAATAGAGGGAAGTGGTGTAATGTTGGACTTTGGAAATATTCTCGTCATCCTAACTATTTTGGTGAAATATTGCTTTGGTGGGGAATTTTTGTGGCATCTACACCTGTACTGAAGGGTGCTGAATGGCTGGTGATCATTGGACCAATCTTTCTCACATTATTGCTTCTTTTTGTCAGTGGCATTCCACTTCTTGAGGATTCAGCGGATAAAAAGTTTGGCAATGTAGATGGATATAGGATATACAAAAAGAGAACCAGGTTAATTTACCTCCTCAATGTCATATATCTTTTCGGTCTCTGGTTAAGCAGAAATGTCTCTTCACCTAGTGCGATGAGTCGATTATTATTGTTTTGTCATTAA

>Glyma05g33940.3   sequence type=CDS   gene model=Glyma05g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACCATCATCGACTCCCATTTCTTGGCCTTCACTGCCCTTGTCACTATTGCCTATCAGTTTTTGTTTTTCGTCGTCACTGCGCTCCTCAAATTCGACAAAGTCACTGATTTTGCTGGAAGTACGAATTTCATTATAATTGCTGCATTGACCCTGGTCATCAAAGGCTCCTGGTATTTTCGACAGATAATCCTCACTTTGTTTGTTGGGATATGGGGAATTCGCCTCGGCCTTTTCCTCCTATTCAGAATTTTGCAGTGGGGAGAGGACCGACGCTTTGATGAAATGCGCAGTAATTTGGGTAGACTGGCCATATTTTGGATATTTCAGGCTGTCTGGGTGTGGGCTGTGAGTTTACCTGTTACAGTGGTTAATGCAAGCGACAGAAATCCCTTCCTACAGGTTGTTGATATAGTAGGGTGGATTTTGTGGGCTGTGGGTTTTATTGTGGAAGGTACAGCAGATCAACAAAAGCTGCATTTCAAAAGATCTTCAGAAAATAGAGGGAAGTGGTGTAATGTTGGACTTTGGAAATATTCTCGTCATCCTAACTATTTTGGTGAAATATTGCTTTGGTGGGGAATTTTTGTGGCATCTACACCTGTACTGAAGGGTGCTGAATGGCTGGTGATCATTGGACCAATCTTTCTCACATTATTGCTTCTTTTTGTCAGTGGCATTCCACTTCTTGAGGATTCAGCGGATAAAAAGTTTGGCAATGTAGATGGATATAGGATATACAAAAAGAGAACCAGCCCTTTAATCCCGTTGCCACGATCAATCTATGGGAACTTATCCGCATGGTTCAAAACAACTTTTCTCTTCGAGTTTCCATTCTACAGTCGTAATCTACCACAAGAAGAGAACTGGTGA

Predicted protein sequences of Glyma05g33940

Limit To All Plant Sequences

>Glyma05g33940.1   sequence type=predicted peptide   gene model=Glyma05g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTIIDSHFLAFTALVTIAYQFLFFVVTALLKFDKVTDFAGSTNFIIIAALTLVIKGSWYFRQIILTLFVGIWGIRLGLFLLFRILQWGEDRRFDEMRSNLGRLAIFWIFQAVWVWAVSLPVTVVNASDRNPFLQVVDIVGWILWAVGFIVEGTADQQKLHFKRSSENRGKWCNVGLWKYSRHPNYFGEILLWWGIFVASTPVLKGAEWLVIIGPIFLTLLLLFVSGIPLLEDSADKKFGNVDGYRIYKKRTSPLIPLPRSIYGNLSAWFKTTFLFEFPFYSRNLPQEENWCSANSGKISDALKIG*

>Glyma05g33940.2   sequence type=predicted peptide   gene model=Glyma05g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTIIDSHFLAFTALVTIAYQFLFFVVTALLKFDKVTDFAGSTNFIIIAALTLVIKGSWYFRQIILTLFVGIWGIRLGLFLLFRILQWGEDRRFDEMRSNLGRLAIFWIFQAVWVWAVSLPVTVVNASDRNPFLQVVDIVGWILWAVGFIVEGTADQQKLHFKRSSENRGKWCNVGLWKYSRHPNYFGEILLWWGIFVASTPVLKGAEWLVIIGPIFLTLLLLFVSGIPLLEDSADKKFGNVDGYRIYKKRTRLIYLLNVIYLFGLWLSRNVSSPSAMSRLLLFCH*

>Glyma05g33940.3   sequence type=predicted peptide   gene model=Glyma05g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTIIDSHFLAFTALVTIAYQFLFFVVTALLKFDKVTDFAGSTNFIIIAALTLVIKGSWYFRQIILTLFVGIWGIRLGLFLLFRILQWGEDRRFDEMRSNLGRLAIFWIFQAVWVWAVSLPVTVVNASDRNPFLQVVDIVGWILWAVGFIVEGTADQQKLHFKRSSENRGKWCNVGLWKYSRHPNYFGEILLWWGIFVASTPVLKGAEWLVIIGPIFLTLLLLFVSGIPLLEDSADKKFGNVDGYRIYKKRTSPLIPLPRSIYGNLSAWFKTTFLFEFPFYSRNLPQEENW*

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